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HoneyBook Payroll: Set up and pay 1099 contractors (pricing, onboarding, and compliance)

Learn how to set up HoneyBook Payroll for 1099 contractors, verify your bank account, complete onboarding, manage pricing, resolve RFIs, and run or reprocess contractor payments—all in one place

Updated today

HoneyBook Payroll lets U.S.-based businesses pay 1099 contractors directly from their HoneyBook account. Payroll supports only contractor payments and helps you send payments in one place, keep payroll and bookkeeping organized, and prepare for tax season with built-in reports and forms. Contractors must complete onboarding before they can be paid, but you can add and invite them any time during setup.


Important: Payroll pricing and subscription details

HoneyBook Payroll is free for all members through April 1, 2026. If you continue using Payroll after that date, you’ll be automatically subscribed starting April 1, 2026, unless you cancel your Payroll subscription before then.

  • You receive advance notice before billing begins, and can cancel your HoneyBook Payroll subscription any time before April 1, 2026 to avoid being charged

  • From the navigation menu, if you select your company logo > Company settings > Membership, you can manage your subscription under “Paid add ons”

Contractor-only payroll pricing (starting April 1, 2026)

HoneyBook Payroll pricing is based on contractors you pay, not how many contractors you’ve listed. The monthly cost is:

  • $30 base fee, plus

  • $6 per contractor paid during the month

    • You’re only charged the $6 contractor fee for contractors you actually pay that month, no matter how many payments you send to each one

Also good to know:

  • If you pay a contractor multiple times in the same month, it’ll still count as one $6 fee

  • Contractors who you don’t pay during the month won’t be billed

  • Your monthly cost can change based on how many contractors you pay each month

Example

  1. You have 10 contractors in HoneyBook Payroll

  2. In March, you paid only 2 contractors

  3. Your cost for that month would be:

    1. $30 base fee, plus

    2. $12 for contractors paid ($6 × 2 contractors)

    3. Total monthly cost: $42

  4. The other 8 contractors didn’t add to your cost because you didn’t pay them in March


How HoneyBook Payroll works

HoneyBook Payroll happens in 3 stages. You don’t need to complete everything at once, and some steps only apply when you’re ready to pay contractors.

  1. Company setup (one time)

  2. Contractor setup (as needed)

You can pause and return to setup any time.


Stage 1: Company setup (one time)

Start payroll setup

  1. From the navigation menu, select Finance > Payroll

  2. Select Set up payroll

  3. Select Start next to each setup step as you complete it

Answer a few onboarding questions

Begin by answering a short set of questions about your business. This helps HoneyBook configure payroll correctly.

Add your work location

This step is required before you can continue setup

  • Enter the street address where your contractors physically work

  • This address is used for payroll and tax filings

Fill in your tax information

You must add your work location before completing your federal and state tax information in HoneyBook. This step ensures your payroll taxes and year-end forms including 1099s are filed accurately.

Your Federal Employer Identification Number (FEIN) is a 9-digit number issued by the IRS. It’s required in order to process payroll taxes correctly, file required tax forms, and issue 1099s to contractors at year-end. If you don’t already have a FEIN, you can apply for one for free on the IRS website. The online application typically takes just a few minutes to complete.

Add your Federal Employer Identification Number (FEIN)

  1. Select Profile in your employer account

  2. Select the pencil icon on the “Tax info” card

  3. Locate the federal tax information, or state tax information, if applicable, then select Edit

  4. Enter or update your FEIN or state account number in the provided field

    • Make sure you enter the correct FEIN or state account number. Incorrect information can result in payroll filing errors, penalties, or interest assessments when payroll taxes are submitted.

    • If you’re unsure of your FEIN or state account number, contact the IRS or your state tax agency directly to verify first

  5. Select Save

Add and verify your company bank account

You must add your company bank account before it can be verified, which will be used for contractor payments and taxes. There are 2 ways you can verify your bank account:

  1. Instantly using Plaid, or

  2. Manually, which can take up to 2–3 business days

When verification is complete, you’ll receive an email titled “Your HoneyBook payroll is ready!”

Verify your bank account with Plaid (recommended)

The fastest way to verify your bank account for Payroll is by connecting through Plaid, our secure bank connection partner. To verify using Plaid:

  1. When adding a new bank account, select Add with Plaid

  2. Search for, then select your bank

  3. A secure pop-up will appear. Enter your bank username and password.

    • If required, complete multi-factor authentication. For example, enter a verification code sent to your phone.

  4. Once logged in, select the account you want to use for Payroll

    • After successful connection, your routing number and account numbers will automatically populate in the bank account card

  5. Select Save at the bottom of the card

Using Plaid helps ensure your bank details are accurate and reduces delays in payroll processing.

Manually verify your bank account (micro-deposit verification)

In some cases, your bank account can’t be instantly verified and will require micro-deposit verification. This process typically takes up to 2–3 business days.

Micro-deposit verification is required by HoneyBook Payroll’s partner, Salsa, to confirm that you own the bank account entered during onboarding before funds can be withdrawn to pay contractors and tax authorities. In terms of how micro-deposit verification works, after entering your bank routing and account numbers:

  1. Salsa initiates verification after your bank details are submitted

  2. Within 2–3 business days, 3 transactions will appear in your bank account:

    • 2 small deposits (credits under $1 each)

    • One withdrawal (debit) reversing the total of those 2 deposits

  3. Once the deposits appear, enter the exact amounts of the 2 deposits

  4. If the amounts match, your bank account will be verified and ready for payroll use

📣 Note

  • Deposits may take up to 3 business days to appear

  • You must enter the deposit amounts exactly as they appear

  • Payroll can’t run until the bank account is successfully verified

  • If you’re unable to complete micro-deposit verification, you can request manual review by providing photos of your government-issued ID and a voided check from the company bank account. These documents can be submitted to Salsa support for manual verification.

Add a company signatory

Add an owner or controller authorized to sign company documents. The company signatory must:

  • Own at least 25 percent of the company, or

  • Be authorized to act on the company’s behalf

This is often the business owner, president, or a corporate officer.

What is an RFI (request for information)?

During company setup or ongoing compliance review, you may receive a request for information (RFI) from HoneyBook. An RFI is a compliance request for additional documentation to verify:

  • Your business identity

  • Company ownership or signatory details

  • Tax information

  • Bank account ownership

This is a standard financial compliance process required to meet federal and banking regulations.

Why RFIs happen

RFIs may be triggered if:

  • Information entered doesn’t match IRS or public records

  • Additional verification is required for your FEIN

  • Bank account ownership needs confirmation

  • Ownership or controller details require clarification

What to expect

  1. You’ll receive an email from Salsa or HoneyBook Payroll requesting documents

  2. Payroll setup or payments may be paused until the request is completed

  3. You’ll be given instructions on what documentation to upload. Common documents requested may include:

    • Government-issued ID

    • Business registration documents

    • EIN confirmation letter (CP-575)

    • Bank verification documents

📣 Note

Responding quickly helps prevent delays in payroll processing. Payroll can’t proceed until the RFI is resolved.


Stage 2: Contractor setup (as needed)

Get your team ready

You must add your work location before completing this step.

  • Invite contractors to enter their own information and be ready for payment

  • When you invite a contractor:

    • They receive an email titled “Set up your HoneyBook payroll account!”

    • They select Set up now and complete onboarding

    • Onboarding includes entering their legal name, tax information, and direct deposit details

    • When a contractor is paid, they receive an email confirming the payment

  • Each contractor must complete onboarding before you can submit payroll for them

📚 Tips

  • You can invite contractors even if you don’t plan to pay them right away

  • If you see a message prompting you to contact the Support team when running payroll, it usually means one or more contractors haven’t finished onboarding. Ask them to log in and complete setup before retrying.

Add or manage contractors

You can add, edit, or remove contractors any time.

Add a contractor

  1. From the navigation menu, select Finance > Payroll

  2. Select Workers list > Add worker

  3. Enter the contractor’s legal name and email address

  4. Choose one option:

    • Invite worker to enter their own info, or

    • I’ll enter the info myself if you already have their details

  5. Select Add worker

Other contractor actions

From Finance > Payroll > Workers list, select the More actions menu icon three-dot menu icon next to a contractor to:

  • Edit onboarding information

  • View associated projects

  • Assign the contractor to a project

  • Delete the contractor


Stage 3: Payroll management (ongoing)

Pay contractors

  1. From the navigation menu, select Finance > Payroll

  2. Select Send payment

    • If a payroll is in progress, you can select Resume or Delete

  3. Select the contractors you want to pay > Next

  4. Choose the payment date

    • Optional: Select + Add work period to show what the payment covers

  5. Select Send payment

  6. On the “Hours and earnings” page, you can select the More actions menu icon three-dot menu icon next to a staff member, then select:

    • Edit pay

    • Edit deductions

    • Add memo

  7. Select Next > Submit payroll, then confirm the remaining prompts

    • If needed, you can select Cancel payroll before submission

Cancel and reprocess a payroll run

If you need to make changes after submitting payroll for your contractors, you can cancel and resubmit the payroll before the daily processing cutoff.

  1. From the navigation menu, select Finance > Payroll

  2. Find the payroll run, then select View details

  3. Select Cancel payroll and confirm the cancellation

  4. After canceling:

    1. Refresh the page. The payroll will reappear on your dashboard with the option to resume.

    2. Select Resume, make edits on the “Hours and earnings” page, and select Submit payroll again

Important timing

  • Payroll can be canceled until 8:00 pm PT on the processing day

  • You must resubmit payroll before 8:00 pm PT to avoid payment delays

  • If the payroll has already begun processing, the Cancel payroll option will no longer appear. At that point, contact our Support team to request a payroll void:

    • Select the Question Mark icon on any HoneyBook page

    • Choose Message us > Send us a message

    • Enter “Talk to a person”

  • Depending on timing, some tax payments may have already been submitted and may not be refundable

Taxes and bookkeeping

Download payroll reports

  1. From the navigation menu, select Reports

  2. Select Download report

  3. Choose a time frame, then scroll down to select Payroll

  4. Select Download

  5. You’ll receive a notification when the report is ready

Find your 1099 tax forms

  1. From the navigation menu, select Finance > Tax Hub

  2. Under “[year] tax documents,” select the year

  3. Download your 1099-K or 1099-NEC forms

Update payroll settings

From Finance > Payroll > Settings, you can select and manage:

  • Business info

  • Addresses

  • Tax info

  • Pay groups

  • Bank accounts

  • Pay types

  • Check printing settings


Still have questions? Feel free to send us a message by clicking the Question Mark icon on any HoneyBook page. Our team is always happy to help!